Saturday, June 14, 2008

From my favourite magazine this week

Gibbs entropy and dynamics


G. Piftankin and D. Treschev
Let M be the phase space of a physical system. The dynamics
is determined by the map T : M-->M, preserving the measure
[mu]. Let nu be another measure on M, dnu=rho d[mu]. Gibbs
introduced the quantity s(rho)=[integral]rho log rho d[mu]
as an analog of the thermodynamical entropy. Attempts to
... [Chaos 18, 023116 (2008)] published Tue May 20, 2008.

http://scitation.aip.org/getabs/servlet/GetabsServlet?prog=normal&id=CHAOEH000018000002023116000001&idtype=cvips&gifs=yes

Saturday, June 7, 2008

Test from Cansi

Getting around Google's insistance of a gmail account
for each editor.


Monday, June 2, 2008

Overhyped health stories? They're all pants

Not that this is anything unusual.
But who is to judge? And who is
the willing consumer of such quick
"Studies show..." stories?

Still, there could be an accompanying
warning and with computers so ubiquitous
we might have the original data to work
in such stat programmes as R and others,
by ourselves.

But then it is the Mail and who has time
to challenge everything we read, or want to.

McLuhan's the-newspaper-as-a-warm-bath-of-society.

X-URL: http://www.guardian.co.uk/media/2008/jun/02/pressandpublishing.healthandwellbeing

Overhyped health stories? They're all pants

Peter Wilby The Guardian, * Monday June 2 2008

Last Tuesday, the Daily Mail informed readers that cocoa could be good
for the heart; that a diet pill will make you feel full as soon as you
start eating; that diseased gums increase the risk of cancer; and that
a third of babies whose parents smoke at home will end up in hospital.
That was just the news pages. In the health section, it had underpants
that control blood pressure, tree bark that eases arthritis, a herb
that relieves ear infections and peanut butter that stops hiccups.

Whether Mail readers rushed out to buy cocoa, peanut butter and
underpants, and to strip nearby trees, I do not know. But newspapers
believe health coverage attracts readers. We live in a medically
anxious society: surveys suggest one in two Britons worry about their
health against one in 10 in the 1960s. At some level, newspaper
reports must influence eating, drinking and buying habits, and affect
the wellbeing of readers and their families. Yet the press, sceptical
about anything politicians say or do, becomes credulous when faced
with medicine. All research studies are "authoritative", all medical
journals "prestigious", all scientists "experts", all findings
"breakthroughs".

Research findings rarely justify the categorical press reports, as a
new section on the NHS Choices website, Behind the Headlines, shows.
Each day, it analyses two stories, looking at what the papers said,
comparing their accounts with the studies on which they are based, and
assessing the validity of the research itself. The treatment is
factual and unhysterical, and it raises important questions about
journalism.

Take that heart-protecting cocoa. The research, from an American
journal, studied patients with diabetes, as the Mail made clear. The
cocoa used is not available to buy, as the Mail didn't make clear. Nor
did the research cast direct light on cardiovascular risk; it looked
at the effect on the main artery in the upper arm when cocoa is
enriched with flavanols, a type of antioxidant. Fruit and vegetables
also contain flavanols and, unlike most cocoa products, aren't full of
fat and sugar. Most important, neither the Mail nor other papers that
covered the study explained it was funded by Mars.

Another recent story concerned celery which, it was reported, could
help victims of high-speed car crashes and brain diseases such as
Alzheimer's. In fact, according to NHS Choices, the study, carried out
on mice, merely established that luteolin, a compound found in celery,
reduced the production of one molecule associated with brain
inflammation.

A third story was about that familiar bogey, the mobile phone. Mothers
who used handsets during pregnancy, it was reported, risked their
children suffering hyperactivity and emotional difficulties.

There were two big problems, common in reports of science and
medicine. First, the press implied a causal connection. The research
proved no such thing; for example, mothers who use mobile phones a lot
might be mothers who give their babies insufficient attention. Second,
all papers reported a 56% increase in risk for the children. This
sounds big, until you realise hyperactivity isn't that common and,
therefore, 95% of the children whose mothers used mobiles were
entirely unaffected.

Journalists would argue that their stories include caveats, plus the
words "can" and "may". Besides, nobody will come to much harm from
celery or cocoa and, if parents stop using mobiles, who cares? I don't
think this will do. Readers look at headlines and intros and often
don't get to the caveats, and such stories can create hope or anxiety
where neither is justified. The best-known example concerns research,
published in the Lancet, which linked the MMR vaccine with autism.
This study of 12 children got coverage far beyond what it merited, and
led to campaigns in several papers. As Cardiff University's Tammy
Boyce reports in her book Health, Risk and News, the UK child
vaccination rate fell as low as 80% after the coverage peaked. In the
US, where only a handful of stories appeared, the rate never fell
below 90%.

So reporting of medical research can sometimes lead to damaging
consequences. It is not easy, though, to see a solution. The stories
analysed by NHS Choices were not exactly wrong or even distorted.
Rather, they misrepresent the provisional, tentative nature of
research. Science proceeds by gradual accumulation of evidence, not by
the sudden "eureka!" moments implied in the press.

Sir Muir Gray, the NHS chief knowledge officer, told me the medical
journals should share the blame. They too are under commercial
pressures and tend to favour "positive" findings, issuing excitable
press releases about them.

Medical research doesn't fit the conventional news frame, which
demands crisp intros, novelty and immediacy. Many stories analysed by
NHS Choices wouldn't have made the paper if they had been written up
correctly. So should the press leave the public in ignorance? Perhaps
it should. A tale about the supposed effects of celery is neither
informative nor particularly entertaining. As one health journalist
used to say, there are, in any event, only four medical stories: new
treatment gives hope; old treatment causes cancer; patients will
suffer unless doctors get more; and jogger's nipple, the novelty
story.

Health reporters, instead of churning out several inconsequential
variants on these four each day, would be better employed writing
"state of knowledge" features, on what scientists now think about the
treatment of particular complaints. And if they must write spurious
"news", perhaps they should regularly steer their readers to the sober
analysis on NHS Choices.

So, what bikkies do you have in the office or lab?

X-URL: http://newsvote.bbc.co.uk/mpapps/pagetools/print/news.bbc.co.uk/2/hi/business/7432092.stm


BBC NEWS

Biscuits 'key' to clinching business deals

About four out of five UK businesses believe the type of biscuit they
serve to potential clients could clinch the deal or make it crumble, a
survey says.

The outcome of a meeting could be influenced by the range and quality
of biscuits, according to 1,000 business professionals quizzed by
Holiday Inn.

The chocolate digestive was deemed to make the best impression
followed by shortbread and Hob Nobs.

Lawyers were most impressed by good boardroom biccies, the survey
added.

Dunking Do-Nots

Jammie Dodgers and Bourbons were also among the biscuit types thought
to help sweet-talk customers.

However crumbly biscuits are a big no-no in the meeting environment,
the questionnaire found, with 30% frowning on a regular digestive in
the work environment.

And when it comes to helping yourself to biscuits from a communal
plate, the most acceptable number to take is two, the research
concluded.

However more than half of respondents looked down on dunking biscuits
in tea or coffee during a meeting.

A survey released last year, which quizzed 7,000 people, suggested
that the custard cream is the nation's favourite biscuit.

Story from BBC NEWS:

http://news.bbc.co.uk/go/pr/fr/-/2/hi/business/7432092.stm

Published: 2008/06/02 16:41:40 GMT

[Does the BBC Science unit care?]

Language Log, a consortium of
Anglo-phone linguistic scholars
goes off the deep end again over
the rhetoric of science coverage.

Do people even get the later item?
Who members more than the first para?

X-URL: http://languagelog.ldc.upenn.edu/nll/?p=184#more-184

[4]Language Log
[8]Parrots and children: still silly season at the BBC
May 23, 2008 @ 11:02 am? Filed by [9]Geoffrey K. Pullum under

Yesterday the BBC [13]published a story (thanks to Sam Tucker for the
reference) about a stray red-tailed African grey parrot that told
police how to find its owner. ....

The story is probably true in outline. No one disputes that parrots
can be trained to do a pretty good acoustic reproduction of a human
utterance. And they will do just as well on an address as on a line
from a children's song or a few verses from the Kor'an; the content
doesn't matter -- for them, there is no content. But a paragraph at
the end of the story reveals that the BBC still brings out its most
gullible writers (or perhaps its most cynical and dishonest writers)
as soon as anything to do with the cognitive or linguistic sciences
comes on the scene. The last para says this:

The African Grey parrot is considered one of the most intelligent
birds and is said by experts to have the cognitive ability of a
six-year-old.

They mean a human of age six. There are people writing purportedly
serious stories for the British Broadcasting Corporation who think
that a grey parrot has the cognitive ability of a normal six year old
human child. Have these people never met a normal six-year-old human
child?
....
Perhaps, as Mark once suggested, at the BBC [14]they just don't care.
For now, I'm inclined to think that the BBC's coverage of science,
especially cognitive and linguistic science, still deserves the
ridicule that has been heaped on it in the past here on Language Log
([15]this post on Language Log Classic offers a sample, and lists a
few other posts on BBC science reporting).

----- End forwarded message -----

Saturday, February 23, 2008

Whither the revered scientist?

Of greater interest now that
Nature magazine has sounded off
on Canada's science agenda in
the federal Conservative government.

No one reads science daily do they?
Nor visits Cisti once a week down
Montreal Road for a quick read and
some chatter with the free services?

Sad, really.

[ And I wonder how Calami could stand
sitting so long on a panel with those
new hips. ]

X-URL: http://www.thestar.com/News/article/273340

Sunday, November 04, 2007 | Toronto Star
SOCIETY
TheStar.com | News | Whither the revered scientist?

Down the tubes, the public seems to think, in the face of market
pressures, bungled crises, ethical lapses

Nov 04, 2007 04:30 AM Peter Calamai Science Writer

After two days of provocative ideas and spirited exchanges at an
international gathering recently in Toronto, British museum curator
Robert Bud neatly summed up the collective wisdom.

"The scientists are terrified."

This widespread angst among scientists has been sparked by evidence
that the traditional social compact between science and the public has
been irrevocably sundered. Put bluntly, much of the public no longer
implicitly trusts either scientists or their pronouncements about
everything from climate change to the safety of children's vaccines.

<span class="fullpost">
And that matters, not just because of the call on taxpayers to fund
increasingly costly research, but also because the impact of science
and technology on our lives seems to mount by the minute.

"It is difficult to think of anything we do in public life that
doesn't pass through the window of science and technology," observed
Sheila Jasanoff, a professor at Harvard's John F. Kennedy School of
Government who delivered one of two evening public lectures at the
CBC's Glenn Gould Studio.

Yet judging from the tenor of the meeting, restoring some measure of
the lost trust will require scientists to rethink the basic tenets of
their calling and to fundamentally renegotiate their relationships
with the public.

The public, too, will need to accept a more active role, examining
critically issues such as who benefits from advances in science and
technology, who owns the intellectual property, and how it will be
applied.

"Being better informed is not enough, the public must also be
empowered," said Peter Broks, author of Understanding Popular Science.

Public unease and outright mistrust concerning science has repeatedly
cropped up in opinion polling in recent years::

Almost one in four of 1,000 adults surveyed for the British Royal
Society in 2002 didn't trust scientists in general to tell the truth.

A 2004 survey of 2,000 adult Canadians for federal science departments
found almost 30 per cent expressing concern that science is "going too
far and is hurting society rather than helping it."

The largest ever survey of public values and attitudes toward science
and technology involved face-to-face interviews in 2005 with almost
33,000 adults in 32 European countries. Four in five said that the
authorities should formally oblige scientists to respect ethical
standards, a result widely interpreted as indicating a lack of trust
in scientists to police themselves.

Reasons put forward for this unease are many and varied, including the
blurring of the lines between science, business and government, the
increasing complexity of questions that science is called upon to
answer and a general societal mistrust of institutions.

As further evidence of how seriously this angst is being taken, the
Toronto meeting came on the heels of publication of a seven-point
ethics code for research scientists portrayed as the counterpart of
the Hippocratic Oath for physicians.

This new code already binds all government scientists in Britain,
where it was developed, and is being promoted worldwide by Sir David
King, the U.K. government chief scientific advisor.

"We want to get the idea across to the public that scientists can be
trusted," King told an interviewer, "if they live by the code."

It's unlikely to be that simple, judging by the September "Trust in
Science" workshop here, which drew more than 60 participants from
Canada, the U.S. and the U.K. The driving force behind it was
something called the Cluster for the Humanistic and Social Studies of
Science, just launched with $2 million in federal funding.

The participants were overwhelmingly academics from the humanities and
social sciences who examine the history, philosophy and impact of
technology, as opposed to researchers from the natural sciences,
medicine and life sciences. Indeed, knowledge among the participants
about those other sciences was highly variable.

In their own fields, however, the participants have carried out
pioneering work into public trust in science, with case studies
covering such widely varied topics as Toronto's SARS outbreak and the
deadly levee breach in New Orleans.

A repeated theme among workshop participants was that many scientists
still act as if they possess the "facts," while the public merely has
"opinions."

In reality, however, scientists are increasingly expressing opinions,
and laypersons sometimes possess greater expertise than the
scientists, especially in the case of rare medical afflictions.

Philip Mirowski of the University of Notre Dame laid a large part of
the blame for a loss of public trust in science on three factors.
First, the withdrawal of governments from even attempting to manage
science, thus ceding priorities to the whims of the marketplace;
second, outsourcing of research and development by corporations,
meaning the demise of anything that could be called national science
strengths; and third, the transformation of scientific research into a
"fungible" commodity, so it is essentially interchangeable.

"If you buy your science and I buy my science, then how can it act as
an arbiter of anything?" Mirowski asked.

Trust in science also suffers when scientists can't come up with
definitive answers quickly enough to respond to public concerns, as
illustrated by analysis of the 2003 SARS outbreak in Toronto and the
continuing controversy over vaccination and autism in children.

Alan Richardson, a philosophy professor at the University of British
Columbia, reached his conclusions after studying reports from the two
major SARS inquiries. He noted unfounded advice from experts for the
public to stay away from Chinatown.

"All decisions were decisions under ignorance, because there was no
reliable data during the outbreak," he said. "It didn't exist."

But the greatest damage may have been inflicted by the observation in
the reports from both Dr. Andrew Naylor and Ontario Justice Archie
Campbell: that the public health system failed in the SARS outbreak

"The public health system can only work in a structure of public
trust," Richardson said. "Saying it failed probably means that public
compliance will be harder to achieve in any future outbreak."

Jennifer Keelan, a University of Toronto professor of public health
sciences, has been studying the clash between scientists and activists
who blame their children's autism on low levels of mercury
preservative used to avoid contamination in multi-dose vaccines.

"Mistrust is an understatement to describe the level of vitriol in the
debate," she said.

In effect, a scientific stalemate exists. Some research is said to
show an "association" between the mercury preservative and autism in
lab animals. Yet epidemiologists don't have large enough population
surveys to rule out such long-shot adverse reactions.

Keelan said the activists aren't anti-science, like many
anti-vaccination groups. Nor do they promote "junk" science. They
simply want the scientists to investigate different avenues.

"Will the outputs of science be markedly different if the opportunity
exists for citizens to pose questions?" asked Keelan.

Scientists might ask themselves about the erosion of the traditional
trust relationships among researchers, who once readily exchanged
things like specialized strains of mice or reagents, custom chemicals
used in experiments.

Increasingly such exchanges are now circumscribed by material transfer
agreements, complex legal documents that spell out details like
liability and indemnification, due diligence and standards for care.
Some even feature "reach-through" clauses, guaranteeing the supplier
of the materials a share in any subsequent commercialization because
of subsequent research done elsewhere.

Use of these agreements is exploding. In 1998, the University of
Toronto handled about 30. This year, +*officials have reviewed 170.

Similar growth at U.S. universities prompted this wry workshop comment
from Notre Dame's Mirowski:

"Why should the public trust science when it is becoming apparent that
scientists less and less trust each other?"
_______________________________________________________________

Star science writer Peter Calamai, based in Ottawa, was a panellist at
the Trust in Science workshop, which paid his travel expenses to
attend.
</span>